Test Specified Workflow — ASM_test

This will take a preload file for loading data and a separate preload file for a workflow and test whether it can be run.

Usage

ASM_test_workflow(ds_plf, wf_plf)

Arguments

ds_plf: Vector of preload yaml list files containing data loading
wf_plf: Vector of preload yaml list files containing workflows

Value

List with the following elements:

isgood: Boolean indicating the exit status of the function.
msgs: Messages to be passed back to the user.

Examples

 ds_plf = c(system.file(package="formods", "preload", "ASM_preload.yaml"),
            system.file(package="formods", "preload", "UD_preload.yaml"),
            system.file(package="formods", "preload", "DM_preload_empty.yaml"))

 wf_plf = c(system.file(package="formods", "preload", "ASM_preload.yaml"),
            system.file(package="formods", "preload", "UD_preload.yaml"),
            system.file(package="formods", "preload", "DM_preload_empty.yaml"),
            system.file(package="formods", "preload", "DW_preload.yaml"))

 res = ASM_test_workflow(ds_plf=ds_plf, wf_plf=wf_plf)
#> → ASM: including file
#> → ASM:   source: file.path(system.file(package="onbrand"), "templates", "report.docx")
#> → ASM:   dest:   file.path("config","report.docx")
#> → ASM: including file
#> → ASM:   source: file.path(system.file(package="onbrand"), "templates", "report.pptx")
#> → ASM:   dest:   file.path("config","report.pptx")
#> → ASM: including file
#> → ASM:   source: file.path(system.file(package="onbrand"), "templates", "report.yaml")
#> → ASM:   dest:   file.path("config","report.yaml")
#> → ASM: State initialized
#> → ASM: setting word placeholders: 
#> → ASM:   -> setting docx ph: HEADERLEFT = left header
#> → ASM:   -> setting docx ph: HEADERRIGHT = right header
#> → ASM:   -> setting docx ph: FOOTERLEFT = left footer
#> → ASM: module isgood: TRUE
#> → UD: including file
#> → UD:   source: file.path(system.file(package="onbrand"), "templates", "report.docx")
#> → UD:   dest:   file.path("config","report.docx")
#> → UD: including file
#> → UD:   source: file.path(system.file(package="onbrand"), "templates", "report.pptx")
#> → UD:   dest:   file.path("config","report.pptx")
#> → UD: including file
#> → UD:   source: file.path(system.file(package="onbrand"), "templates", "report.yaml")
#> → UD:   dest:   file.path("config","report.yaml")
#> → UD: State initialized
#> → UD: module checksum updated:897d952fecbc804999396a96f9df4b20
#> → UD: module isgood: TRUE
#> → DM: including file
#> → DM:   source: file.path(system.file(package="onbrand"), "templates", "report.docx")
#> → DM:   dest:   file.path("config","report.docx")
#> → DM: including file
#> → DM:   source: file.path(system.file(package="onbrand"), "templates", "report.pptx")
#> → DM:   dest:   file.path("config","report.pptx")
#> → DM: including file
#> → DM:   source: file.path(system.file(package="onbrand"), "templates", "report.yaml")
#> → DM:   dest:   file.path("config","report.yaml")
#> → DM: module checksum updated: f280116ab6b4488df6de76aff513a83f
#> → DM: State initialized
#> → DM: ds checksum updated: 641fcbc6616d24d05acded4317a3bb12
#> → DM: module checksum updated: 78099100dae67cc0fee50517ea72a920
#> → DM: module isgood: TRUE
#> → # preload_complete is good: TRUE ------------------------------------------
#> → ASM: Running workflow: 
#> → UD: mk_preload isgood: TRUE
#> → DM: mk_preload isgood: TRUE
#> → ASM: writing app state to file on server: 
#> → ASM:   /var/folders/pq/7srbf_fx3rd3k706hgxkg61r0000gp/T//Rtmp8ZXiwp/fileb5677dd41ba6.zip
#> → ASM: Generating reports (code only)
#> → ASM:   Generating report: xlsx
#> → ASM:     appending report for module:DM id:DM priority:1
#> → ASM:   Generating report: pptx
#> → ASM:     appending report for module:DM id:DM priority:1
#> → ASM:   Generating report: docx
#> → ASM:     appending report for module:DM id:DM priority:1
#> → ASM: done writing app state
#> → ASM: including file
#> → ASM:   source: file.path(system.file(package="onbrand"), "templates", "report.docx")
#> → ASM:   dest:   file.path("config","report.docx")
#> → ASM: including file
#> → ASM:   source: file.path(system.file(package="onbrand"), "templates", "report.pptx")
#> → ASM:   dest:   file.path("config","report.pptx")
#> → ASM: including file
#> → ASM:   source: file.path(system.file(package="onbrand"), "templates", "report.yaml")
#> → ASM:   dest:   file.path("config","report.yaml")
#> → ASM: State initialized
#> → ASM: setting word placeholders: 
#> → ASM:   -> setting docx ph: HEADERLEFT = left header
#> → ASM:   -> setting docx ph: HEADERRIGHT = right header
#> → ASM:   -> setting docx ph: FOOTERLEFT = left footer
#> → ASM: module isgood: TRUE
#> → DM: including file
#> → DM:   source: file.path(system.file(package="onbrand"), "templates", "report.docx")
#> → DM:   dest:   file.path("config","report.docx")
#> → DM: including file
#> → DM:   source: file.path(system.file(package="onbrand"), "templates", "report.pptx")
#> → DM:   dest:   file.path("config","report.pptx")
#> → DM: including file
#> → DM:   source: file.path(system.file(package="onbrand"), "templates", "report.yaml")
#> → DM:   dest:   file.path("config","report.yaml")
#> → DM: module checksum updated: f280116ab6b4488df6de76aff513a83f
#> → DM: State initialized
#> → DM: ds checksum updated: 641fcbc6616d24d05acded4317a3bb12
#> → DM: module checksum updated: 78099100dae67cc0fee50517ea72a920
#> → DM: module isgood: TRUE
#> → UD: including file
#> → UD:   source: file.path(system.file(package="onbrand"), "templates", "report.docx")
#> → UD:   dest:   file.path("config","report.docx")
#> → UD: including file
#> → UD:   source: file.path(system.file(package="onbrand"), "templates", "report.pptx")
#> → UD:   dest:   file.path("config","report.pptx")
#> → UD: including file
#> → UD:   source: file.path(system.file(package="onbrand"), "templates", "report.yaml")
#> → UD:   dest:   file.path("config","report.yaml")
#> → UD: State initialized
#> → UD: module checksum updated:897d952fecbc804999396a96f9df4b20
#> → UD: module isgood: TRUE
#> → DW: including file
#> → DW:   source: file.path(system.file(package="onbrand"), "templates", "report.docx")
#> → DW:   dest:   file.path("config","report.docx")
#> → DW: including file
#> → DW:   source: file.path(system.file(package="onbrand"), "templates", "report.pptx")
#> → DW:   dest:   file.path("config","report.pptx")
#> → DW: including file
#> → DW:   source: file.path(system.file(package="onbrand"), "templates", "report.yaml")
#> → DW:   dest:   file.path("config","report.yaml")
#> → DW: data view checksum updated: 
#> → DW:   old: 
#> → DW:   new: e19ddb59715ba77afdd1907053aa5d14
#> → DW: module checksum updated:a9496b622f92f683cc8c69f65ac1ece4
#> → DW: State initialized
#> → DW: data view checksum updated: 
#> → DW:   old: 
#> → DW:   new: e19ddb59715ba77afdd1907053aa5d14
#> → DW: module checksum updated:0955d1f9a1922b95277b4ad1df38e987
#> → DW: data view checksum updated: 
#> → DW:   old: 
#> → DW:   new: e19ddb59715ba77afdd1907053aa5d14
#> → DW: module checksum updated:3d3523604fcde20ce1792b16611bdba2
#> → DW: data view checksum updated: 
#> → DW:   old: 
#> → DW:   new: e19ddb59715ba77afdd1907053aa5d14
#> → DW: module checksum updated:dfec3d5aa14c2716ccf367706931693f
#> → DW: loading data view idx: 1
#> → DW:   -> setting data source: myDS
#> → DW: setting name: Observations
#> → DW: module checksum updated:4d9fd3d913355669d14e0ac710b0b5dc
#> → DW:   -> filter
#> → DW: data view checksum updated: 
#> → DW:   old: e19ddb59715ba77afdd1907053aa5d14
#> → DW:   new: 0017bd7cdc15ff708408b2d60672ef88
#> → DW: module checksum updated:2aba88838dee694a3d2813ed9f2837d2
#> → DW:   -> filter
#> → DW: data view checksum updated: 
#> → DW:   old: 0017bd7cdc15ff708408b2d60672ef88
#> → DW:   new: 278da634fa74dc23eae6db31314e0324
#> → DW: module checksum updated:c181a352a2bd3592494d917b87057086
#> → DW:   -> mutate
#> → DW: data view checksum updated: 
#> → DW:   old: 278da634fa74dc23eae6db31314e0324
#> → DW:   new: a164ecd5a527b2b38058230c1daa0080
#> → DW: module checksum updated:048df4e8afa9494121e72808981c842c
#> → DW: loading data view idx: 2
#> → DW:   -> setting data source: myDS
#> → DW: setting name: PK 3mg SD IV
#> → DW: module checksum updated:c54c6fc20ff13fd14fbb61c786f65078
#> → DW:   -> filter
#> → DW: data view checksum updated: 
#> → DW:   old: e19ddb59715ba77afdd1907053aa5d14
#> → DW:   new: 0017bd7cdc15ff708408b2d60672ef88
#> → DW: module checksum updated:496c1149f14ec1c48d4ddbc5aec72a72
#> → DW:   -> filter
#> → DW: data view checksum updated: 
#> → DW:   old: 0017bd7cdc15ff708408b2d60672ef88
#> → DW:   new: 278da634fa74dc23eae6db31314e0324
#> → DW: module checksum updated:d65a6b3c16bea4262f7fb15a1d961512
#> → DW:   -> filter
#> → DW: data view checksum updated: 
#> → DW:   old: 278da634fa74dc23eae6db31314e0324
#> → DW:   new: 00bd5f01d02d634acf134cf01970a1c3
#> → DW: module checksum updated:f90816b8f2ef9aeaad82e4a00880e536
#> → DW:   -> filter
#> → DW: data view checksum updated: 
#> → DW:   old: 00bd5f01d02d634acf134cf01970a1c3
#> → DW:   new: a01562e32a19fd4b10f88ace089346c6
#> → DW: module checksum updated:452fc9d9131592650a93b4b49de961d1
#> → DW: loading data view idx: 3
#> → DW:   -> setting data source: myDS
#> → DW: setting name: PK 3mg SD IV (NCA)
#> → DW: module checksum updated:3b177ed09a80dfaf15c9f3dde8b9a8fb
#> → DW:   -> filter
#> → DW: data view checksum updated: 
#> → DW:   old: e19ddb59715ba77afdd1907053aa5d14
#> → DW:   new: 0017bd7cdc15ff708408b2d60672ef88
#> → DW: module checksum updated:ce7e35b3bc2e1f53088ae7edd5b4345e
#> → DW:   -> filter
#> → DW: data view checksum updated: 
#> → DW:   old: 0017bd7cdc15ff708408b2d60672ef88
#> → DW:   new: 198f7d878f23121868e677c0b86a5f3c
#> → DW: module checksum updated:64a5146d5e7070664557a7ff3d80f6f0
#> → DW:   -> filter
#> → DW: data view checksum updated: 
#> → DW:   old: 198f7d878f23121868e677c0b86a5f3c
#> → DW:   new: 4326a7b6b9040676b320b387ba5b8ad9
#> → DW: module checksum updated:2cf968d6e72262f9274ea0389f717e84
#> → DW: loading data view idx: 4
#> → DW:   -> setting data source: myDS
#> → DW: setting name: PKPD 3mg SD IV (NCA)
#> → DW: module checksum updated:67e9d6e6b2e085808be155613f8efe20
#> → DW:   -> filter
#> → DW: data view checksum updated: 
#> → DW:   old: e19ddb59715ba77afdd1907053aa5d14
#> → DW:   new: 0017bd7cdc15ff708408b2d60672ef88
#> → DW: module checksum updated:a7a211de4eb91c91098a1f20e62bec73
#> → DW:   -> filter
#> → DW: data view checksum updated: 
#> → DW:   old: 0017bd7cdc15ff708408b2d60672ef88
#> → DW:   new: 198f7d878f23121868e677c0b86a5f3c
#> → DW: module checksum updated:306f66790aca305ff1b715f34802610e
#> → DW:   -> filter
#> → DW: module isgood: TRUE
#> → # preload_complete is good: TRUE ------------------------------------------
#> → ASM: post-processing state for module: ASM id: ASM
#> → ASM:   -> running ASM_onload() for module id: ASM
#> → ASM: post-processing state for module: DM id: DM
#> → ASM:   -> running DM_onload() for module id: DM
#> → ASM: post-processing state for module: UD id: UD
#> → ASM: post-processing state for module: DW id: DW