Append Report Elements

Takes the current state of the app and appends data views to an xlsx report object.

Usage

DW_append_report(state, rpt, rpttype, gen_code_only = FALSE)

Arguments

state: DW state from DW_fetch_state()
rpt: Report with the current content of the report which will be appended to in this function. For details on the structure see the documentation for FM_generate_report.
rpttype: Type of report to generate (supported "xlsx").
gen_code_only: Boolean value indicating that only code should be generated (FALSE).

Value

list containing the following elements

isgood: Return status of the function.
hasrptele: Boolean indicator if the module has any reportable elements.
code: Code to generate reporting elements.
msgs: Messages to be passed back to the user.
rpt: Report with any additions passed back to the user.

Examples

# We need a state object to use below
sess_res = DW_test_mksession()
#> → ASM: including file
#> → ASM:   source: file.path(system.file(package="onbrand"), "templates", "report.docx")
#> → ASM:   dest:   file.path("config","report.docx")
#> → ASM: including file
#> → ASM:   source: file.path(system.file(package="onbrand"), "templates", "report.pptx")
#> → ASM:   dest:   file.path("config","report.pptx")
#> → ASM: including file
#> → ASM:   source: file.path(system.file(package="onbrand"), "templates", "report.yaml")
#> → ASM:   dest:   file.path("config","report.yaml")
#> → ASM: State initialized
#> → ASM: setting word placeholders: 
#> → ASM:   -> setting docx ph: HEADERLEFT = left header
#> → ASM:   -> setting docx ph: HEADERRIGHT = right header
#> → ASM:   -> setting docx ph: FOOTERLEFT = left footer
#> → ASM: module isgood: TRUE
#> → UD: including file
#> → UD:   source: file.path(system.file(package="onbrand"), "templates", "report.docx")
#> → UD:   dest:   file.path("config","report.docx")
#> → UD: including file
#> → UD:   source: file.path(system.file(package="onbrand"), "templates", "report.pptx")
#> → UD:   dest:   file.path("config","report.pptx")
#> → UD: including file
#> → UD:   source: file.path(system.file(package="onbrand"), "templates", "report.yaml")
#> → UD:   dest:   file.path("config","report.yaml")
#> → UD: State initialized
#> → UD: module checksum updated:897d952fecbc804999396a96f9df4b20
#> → UD: module isgood: TRUE
#> → DM: including file
#> → DM:   source: file.path(system.file(package="onbrand"), "templates", "report.docx")
#> → DM:   dest:   file.path("config","report.docx")
#> → DM: including file
#> → DM:   source: file.path(system.file(package="onbrand"), "templates", "report.pptx")
#> → DM:   dest:   file.path("config","report.pptx")
#> → DM: including file
#> → DM:   source: file.path(system.file(package="onbrand"), "templates", "report.yaml")
#> → DM:   dest:   file.path("config","report.yaml")
#> → DM: module checksum updated: f280116ab6b4488df6de76aff513a83f
#> → DM: State initialized
#> → DM: ds checksum updated: 641fcbc6616d24d05acded4317a3bb12
#> → DM: module checksum updated: 78099100dae67cc0fee50517ea72a920
#> → DM: adding preload sources
#> → DM:  - file added: TEST_DATA.xlsx
#> → DM: added: TEST_DATA.xlsx
#> → DM:  - url added: https://raw.githubusercontent.com/john-harrold/formods/refs/heads/master/inst/test_data/SDTM_PC.csv
#> → DM: url added: https://raw.githubusercontent.com/john-harrold/formods/refs/heads/master/inst/test_data/SDTM_PC.csv
#> → DM:  - url added: https://raw.githubusercontent.com/john-harrold/formods/refs/heads/master/inst/test_data/SDTM_EX.csv
#> → DM: url added: https://raw.githubusercontent.com/john-harrold/formods/refs/heads/master/inst/test_data/SDTM_EX.csv
#> → DM:  - url added: https://raw.githubusercontent.com/john-harrold/formods/refs/heads/master/inst/test_data/SDTM_DM.csv
#> → DM: url added: https://raw.githubusercontent.com/john-harrold/formods/refs/heads/master/inst/test_data/SDTM_DM.csv
#> → DM: loading element idx: 1
#> → DM: ds checksum updated: 1c3ccc3e092b7e97513896a8b2d3e23c
#> → DM: module checksum updated: e3389efc03701a252f8edb1203fa4b01
#> → DM: added element idx: 1
#> → DM: loading element idx: 2
#> → DM: ds checksum updated: ce8cd3a990786ef513367fd6cc979ed5
#> → DM: module checksum updated: d7f96afaef11d24e7b353d2f0a36c881
#> → DM: added element idx: 2
#> → DM: loading element idx: 3
#> → DM: ds checksum updated: c27741cf36754b21fb1f5f1526bf876e
#> → DM: module checksum updated: 49dcbb88e5e097e11ff469069611a0f7
#> → DM: added element idx: 3
#> → DM: loading element idx: 4
#> → DM: ds checksum updated: b95a736f4a0e8a5e6a9b6298a2ef04c3
#> → DM: module checksum updated: be5071f47a9858ea51aff14f6a52ea16
#> → DM: added element idx: 4
#> → DM: module isgood: TRUE
#> → DW: including file
#> → DW:   source: file.path(system.file(package="onbrand"), "templates", "report.docx")
#> → DW:   dest:   file.path("config","report.docx")
#> → DW: including file
#> → DW:   source: file.path(system.file(package="onbrand"), "templates", "report.pptx")
#> → DW:   dest:   file.path("config","report.pptx")
#> → DW: including file
#> → DW:   source: file.path(system.file(package="onbrand"), "templates", "report.yaml")
#> → DW:   dest:   file.path("config","report.yaml")
#> → DW: data view checksum updated: 
#> → DW:   old: 
#> → DW:   new: e19ddb59715ba77afdd1907053aa5d14
#> → DW: module checksum updated:a9496b622f92f683cc8c69f65ac1ece4
#> → DW: State initialized
#> → DW: data view checksum updated: 
#> → DW:   old: 
#> → DW:   new: e19ddb59715ba77afdd1907053aa5d14
#> → DW: module checksum updated:0955d1f9a1922b95277b4ad1df38e987
#> → DW: data view checksum updated: 
#> → DW:   old: 
#> → DW:   new: e19ddb59715ba77afdd1907053aa5d14
#> → DW: module checksum updated:3d3523604fcde20ce1792b16611bdba2
#> → DW: data view checksum updated: 
#> → DW:   old: 
#> → DW:   new: e19ddb59715ba77afdd1907053aa5d14
#> → DW: module checksum updated:dfec3d5aa14c2716ccf367706931693f
#> → DW: loading data view idx: 1
#> → DW:   -> setting data source: myDS
#> → DW: setting name: Observations
#> → DW: module checksum updated:4d9fd3d913355669d14e0ac710b0b5dc
#> → DW:   -> filter
#> → DW: data view checksum updated: 
#> → DW:   old: e19ddb59715ba77afdd1907053aa5d14
#> → DW:   new: 0017bd7cdc15ff708408b2d60672ef88
#> → DW: module checksum updated:2aba88838dee694a3d2813ed9f2837d2
#> → DW:   -> filter
#> → DW: data view checksum updated: 
#> → DW:   old: 0017bd7cdc15ff708408b2d60672ef88
#> → DW:   new: 278da634fa74dc23eae6db31314e0324
#> → DW: module checksum updated:c181a352a2bd3592494d917b87057086
#> → DW:   -> mutate
#> → DW: data view checksum updated: 
#> → DW:   old: 278da634fa74dc23eae6db31314e0324
#> → DW:   new: a164ecd5a527b2b38058230c1daa0080
#> → DW: module checksum updated:048df4e8afa9494121e72808981c842c
#> → DW: loading data view idx: 2
#> → DW:   -> setting data source: myDS
#> → DW: setting name: PK 3mg SD IV
#> → DW: module checksum updated:c54c6fc20ff13fd14fbb61c786f65078
#> → DW:   -> filter
#> → DW: data view checksum updated: 
#> → DW:   old: e19ddb59715ba77afdd1907053aa5d14
#> → DW:   new: 0017bd7cdc15ff708408b2d60672ef88
#> → DW: module checksum updated:496c1149f14ec1c48d4ddbc5aec72a72
#> → DW:   -> filter
#> → DW: data view checksum updated: 
#> → DW:   old: 0017bd7cdc15ff708408b2d60672ef88
#> → DW:   new: 278da634fa74dc23eae6db31314e0324
#> → DW: module checksum updated:d65a6b3c16bea4262f7fb15a1d961512
#> → DW:   -> filter
#> → DW: data view checksum updated: 
#> → DW:   old: 278da634fa74dc23eae6db31314e0324
#> → DW:   new: 00bd5f01d02d634acf134cf01970a1c3
#> → DW: module checksum updated:f90816b8f2ef9aeaad82e4a00880e536
#> → DW:   -> filter
#> → DW: data view checksum updated: 
#> → DW:   old: 00bd5f01d02d634acf134cf01970a1c3
#> → DW:   new: a01562e32a19fd4b10f88ace089346c6
#> → DW: module checksum updated:452fc9d9131592650a93b4b49de961d1
#> → DW: loading data view idx: 3
#> → DW:   -> setting data source: myDS
#> → DW: setting name: PK 3mg SD IV (NCA)
#> → DW: module checksum updated:3b177ed09a80dfaf15c9f3dde8b9a8fb
#> → DW:   -> filter
#> → DW: data view checksum updated: 
#> → DW:   old: e19ddb59715ba77afdd1907053aa5d14
#> → DW:   new: 0017bd7cdc15ff708408b2d60672ef88
#> → DW: module checksum updated:ce7e35b3bc2e1f53088ae7edd5b4345e
#> → DW:   -> filter
#> → DW: data view checksum updated: 
#> → DW:   old: 0017bd7cdc15ff708408b2d60672ef88
#> → DW:   new: 198f7d878f23121868e677c0b86a5f3c
#> → DW: module checksum updated:64a5146d5e7070664557a7ff3d80f6f0
#> → DW:   -> filter
#> → DW: data view checksum updated: 
#> → DW:   old: 198f7d878f23121868e677c0b86a5f3c
#> → DW:   new: 4326a7b6b9040676b320b387ba5b8ad9
#> → DW: module checksum updated:2cf968d6e72262f9274ea0389f717e84
#> → DW: loading data view idx: 4
#> → DW:   -> setting data source: myDS
#> → DW: setting name: PKPD 3mg SD IV (NCA)
#> → DW: module checksum updated:67e9d6e6b2e085808be155613f8efe20
#> → DW:   -> filter
#> → DW: data view checksum updated: 
#> → DW:   old: e19ddb59715ba77afdd1907053aa5d14
#> → DW:   new: 0017bd7cdc15ff708408b2d60672ef88
#> → DW: module checksum updated:a7a211de4eb91c91098a1f20e62bec73
#> → DW:   -> filter
#> → DW: data view checksum updated: 
#> → DW:   old: 0017bd7cdc15ff708408b2d60672ef88
#> → DW:   new: 198f7d878f23121868e677c0b86a5f3c
#> → DW: module checksum updated:306f66790aca305ff1b715f34802610e
#> → DW:   -> filter
#> → DW: module isgood: TRUE
#> → # preload_complete is good: TRUE ------------------------------------------
state = sess_res$state

rpt = list(summary = list(), sheets=list())

rpt_res = DW_append_report(state,
  rpt     = rpt,
  rpttype = "xlsx")

# Shows if report elements are present
rpt_res$hasrptele
#> [1] TRUE

# Code chunk to generate report element
cat(paste(rpt_res$code, collapse="\n"))
#> # Observations
#> rpt[["sheets"]][["DW_myDS_1"]] <- DW_myDS_1
#> rpt[["summary"]] <- rbind(rpt[["summary"]],
#>   data.frame(
#>     Sheet_Name  = "DW_myDS_1",
#>     Description = "Observations"
#>   )
#> )
#> 
#> # PK 3mg SD IV
#> rpt[["sheets"]][["DW_myDS_2"]] <- DW_myDS_2
#> rpt[["summary"]] <- rbind(rpt[["summary"]],
#>   data.frame(
#>     Sheet_Name  = "DW_myDS_2",
#>     Description = "PK 3mg SD IV"
#>   )
#> )
#> 
#> # PK 3mg SD IV (NCA)
#> rpt[["sheets"]][["DW_myDS_3"]] <- DW_myDS_3
#> rpt[["summary"]] <- rbind(rpt[["summary"]],
#>   data.frame(
#>     Sheet_Name  = "DW_myDS_3",
#>     Description = "PK 3mg SD IV (NCA)"
#>   )
#> )
#> 
#> # PKPD 3mg SD IV (NCA)
#> rpt[["sheets"]][["DW_myDS_4"]] <- DW_myDS_4
#> rpt[["summary"]] <- rbind(rpt[["summary"]],
#>   data.frame(
#>     Sheet_Name  = "DW_myDS_4",
#>     Description = "PKPD 3mg SD IV (NCA)"
#>   )
#> )

# Tabular summary of data views
rpt_res$rpt$summary
#>   Sheet_Name          Description
#> 1  DW_myDS_1         Observations
#> 2  DW_myDS_2         PK 3mg SD IV
#> 3  DW_myDS_3   PK 3mg SD IV (NCA)
#> 4  DW_myDS_4 PKPD 3mg SD IV (NCA)

Usage

Arguments

Value

See also

Examples